1 Response_reg#1
27-138 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:27:6.61e-28:138:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4W13_RS06620
Response regulator NarL family
Bifidobacterium longum · GCF_015670845
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015670845#I4W13_RS06620Stable P2CS identifier used across views.
GenomeGCF_015670845Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
176-232 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:176:4.26e-16:232:58:58- Raw architecture: Response_reg:27:6.61e-28:138:112:111#HTH_LUXR:176:4.26e-16:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015670845::NZ_JADPCM010000009.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44882-46874Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015670845::NZ_JADPCM010000009.1::G00012Context members
I4W13_RS06620I4W13_RS06625
Partner locus tags
I4W13_RS06620I4W13_RS06625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014485556.1Primary protein accession used for annex mappings.
UniProt accessionA0A395Y208Primary UniProt accession resolved in the annex database.
UniProt IDA0A395Y208_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4W13_RS06620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPCM010000009.1Sequence record reported by the local genomic context database.
Genomic interval44 882-45 607 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 882-46 874 ntGCF_015670845::NZ_JADPCM010000009.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015670845::NZ_JADPCM010000009.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPCM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span44 882-46 874 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 882 nt46 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4W13_RS06620GCF_015670845#I4W13_RS06620
RRNarLCurrent focus
44 882-45 607 nt · Reverse (-)
I4W13_RS06625GCF_015670845#I4W13_RS06625
HKClassic
45 642-46 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000196575#BLIF_RS06340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862948
Simplified PFAM architecture for RROC_0862948
PFAM domain coverage: 165 / 241 aa (68.5%)
1 aa241 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[25-138] | GerE[178-228]
- Domain count: 2
- Matched identifier: RROC_0862948
- Positioned domains: Response_reg 25-138 ; Response_reg 25-138 ; GerE 178-228 ; GerE 178-228
Cluster members and taxonomy
Representative gene: GCF_000196575#BLIF_RS06340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015670845
AssemblyASM1567084v1 · Scaffoldhaploid
Genome composition2 275 027 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key