1 Response_reg#1
6-115 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:6:1.85e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V48_RS13565
Response regulator OmpR family
Thomasclavelia ramosa · GCF_015670235
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_015670235#I4V48_RS13565Stable P2CS identifier used across views.
GenomeGCF_015670235Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:152:2.91e-26:228:77:77- Raw architecture: Response_reg:6:1.85e-34:115:111:111#Trans_reg_C:152:2.91e-26:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_015670235::NZ_JADPBJ010000025.1::G00013
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span31275-36849Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015670235::NZ_JADPBJ010000025.1::G00013Context members
I4V48_RS13555I4V48_RS13560I4V48_RS13565I4V48_RS13570
Partner locus tags
I4V48_RS13555I4V48_RS13560I4V48_RS13565I4V48_RS13570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535601.1Primary protein accession used for annex mappings.
UniProt accessionB0N275Primary UniProt accession resolved in the annex database.
UniProt IDB0N275_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V48_RS13565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPBJ010000025.1Sequence record reported by the local genomic context database.
Genomic interval33 456-34 166 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 275-36 849 ntGCF_015670235::NZ_JADPBJ010000025.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015670235::NZ_JADPBJ010000025.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPBJ010000025.1All displayed genes belong to this local TCS context.
Neighborhood span31 275-36 849 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 275 nt36 849 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
I4V48_RS13555GCF_015670235#I4V48_RS13555
RROmpR
31 275-31 958 nt · Reverse (-)
I4V48_RS13560GCF_015670235#I4V48_RS13560
HKClassic
31 951-33 411 nt · Reverse (-)
I4V48_RS13565GCF_015670235#I4V48_RS13565
RROmpRCurrent focus
33 456-34 166 nt · Reverse (-)
I4V48_RS13570GCF_015670235#I4V48_RS13570
HKClassic
34 159-36 849 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03440Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988500
Simplified PFAM architecture for RROC_0988500
PFAM domain coverage: 185 / 236 aa (78.4%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_0988500
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_015670235
AssemblyASM1567023v1 · Scaffoldhaploid
Genome composition3 804 431 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key