1 Response_reg#1
5-117 aa · 113 aa · 46.3% of protein
Raw token
Response_reg:5:8.41e-17:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS00040
Response regulator LytTR family
Mediterraneibacter faecis · GCF_015669775
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669775#I4U94_RS00040Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 244 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
140-226 aa · 87 aa · 35.7% of protein
Raw token
LytTR:140:0.00000000000000138:226:93:98- Raw architecture: Response_reg:5:8.41e-17:117:118:111#LytTR:140:0.00000000000000138:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669775::NZ_JADPGZ010000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7337-8071Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000001.1::G00013Context members
I4U94_RS00040
Partner locus tags
I4U94_RS00040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015559482.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K2Z2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K2Z2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS00040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval7 337-8 071 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 337-8 071 ntGCF_015669775::NZ_JADPGZ010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span7 337-8 071 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 337 nt8 071 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U94_RS00040GCF_015669775#I4U94_RS00040
RRLytTRCurrent focus
7 337-8 071 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS09360Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806266
Simplified PFAM architecture for RROC_0806266
PFAM domain coverage: 199 / 244 aa (81.6%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-118] | LytTR[140-226]
- Domain count: 2
- Matched identifier: RROC_0806266
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; LytTR 140-226 ; LytTR 140-226
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS09360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key