1 Response_reg#1
10-113 aa · 104 aa · 48.4% of protein
Raw token
Response_reg:10:2.69e-17:113:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U80_RS05875
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_015669695
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669695#I4U80_RS05875Stable P2CS identifier used across views.
GenomeGCF_015669695Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 215 aa (75.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-209 aa · 58 aa · 27.0% of protein
Raw token
HTH_LUXR:152:0.000000000065:209:58:58- Raw architecture: Response_reg:10:2.69e-17:113:104:111#HTH_LUXR:152:0.000000000065:209:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669695::NZ_JADPAP010000005.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10186-10833Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669695::NZ_JADPAP010000005.1::G00011Context members
I4U80_RS05875
Partner locus tags
I4U80_RS05875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195943035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U80_RS05875Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAP010000005.1Sequence record reported by the local genomic context database.
Genomic interval10 186-10 833 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 186-10 833 ntGCF_015669695::NZ_JADPAP010000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669695::NZ_JADPAP010000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span10 186-10 833 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 186 nt10 833 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U80_RS05875GCF_015669695#I4U80_RS05875
RRNarLCurrent focus
10 186-10 833 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669695#I4U80_RS05875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1918512
Simplified PFAM architecture for RROC_1918512
PFAM domain coverage: 163 / 215 aa (75.8%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-117] | GerE[154-208]
- Domain count: 2
- Matched identifier: RROC_1918512
- Positioned domains: Response_reg 10-117 ; GerE 154-208
Cluster members and taxonomy
Representative gene: GCF_015669695#I4U80_RS05875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_015669695
AssemblyASM1566969v1 · Scaffoldhaploid
Genome composition2 250 518 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key