1 Response_reg#1
8-107 aa · 100 aa · 42.2% of protein
Raw token
Response_reg:8:1.85e-17:107:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U88_RS02500
Response regulator LytTR family
Bifidobacterium longum · GCF_015667915
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667915#I4U88_RS02500Stable P2CS identifier used across views.
GenomeGCF_015667915Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 237 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.8% of protein
Raw token
LytTR:139:1.66e-18:230:97:98- Raw architecture: Response_reg:8:1.85e-17:107:103:111#LytTR:139:1.66e-18:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667915::NZ_JADPES010000006.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11026-11739Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667915::NZ_JADPES010000006.1::G00012Context members
I4U88_RS02500
Partner locus tags
I4U88_RS02500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195949736.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U88_RS02500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPES010000006.1Sequence record reported by the local genomic context database.
Genomic interval11 026-11 739 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 026-11 739 ntGCF_015667915::NZ_JADPES010000006.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667915::NZ_JADPES010000006.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPES010000006.1All displayed genes belong to this local TCS context.
Neighborhood span11 026-11 739 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 026 nt11 739 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U88_RS02500GCF_015667915#I4U88_RS02500
RRLytTRCurrent focus
11 026-11 739 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667915#I4U88_RS02500The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0973292
Simplified PFAM architecture for RROC_0973292
PFAM domain coverage: 194 / 237 aa (81.9%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[8-110] | LytTR[140-230]
- Domain count: 2
- Matched identifier: RROC_0973292
- Positioned domains: Response_reg 8-110 ; LytTR 140-230
Cluster members and taxonomy
Representative gene: GCF_015667915#I4U88_RS02500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015667915
AssemblyASM1566791v1 · Scaffoldhaploid
Genome composition2 438 970 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key