1 Response_reg#1
11-65 aa · 55 aa · 31.4% of protein
Raw token
Response_reg:11:0.00000000112:65:56:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U64_RS00900
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_015667675
ClassRRTypeNarLLength175 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667675#I4U64_RS00900Stable P2CS identifier used across views.
GenomeGCF_015667675Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length175 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage105 / 175 aa (60.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa175 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
117-166 aa · 50 aa · 28.6% of protein
Raw token
HTH_LUXR:117:0.00000251:166:50:58- Raw architecture: Response_reg:11:0.00000000112:65:56:111#HTH_LUXR:117:0.00000251:166:50:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667675::NZ_JADPEH010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span232295-232822Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667675::NZ_JADPEH010000001.1::G00002Context members
I4U64_RS00900
Partner locus tags
I4U64_RS00900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195938265.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U64_RS00900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEH010000001.1Sequence record reported by the local genomic context database.
Genomic interval232 295-232 822 nt528 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 295-232 822 ntGCF_015667675::NZ_JADPEH010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667675::NZ_JADPEH010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span232 295-232 822 nt528 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 295 nt232 822 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U64_RS00900GCF_015667675#I4U64_RS00900
RRNarLCurrent focus
232 295-232 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667675#I4U64_RS00900The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2193908
Simplified PFAM architecture for RROC_2193908
PFAM domain coverage: 61 / 175 aa (34.9%)
1 aa175 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-66]
- Domain count: 1
- Matched identifier: RROC_2193908
- Positioned domains: Response_reg 6-66
Cluster members and taxonomy
Representative gene: GCF_015667675#I4U64_RS00900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_015667675
AssemblyASM1566767v1 · Scaffoldhaploid
Genome composition2 353 546 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key