1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:6.12e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS12620
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_015667505
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS12620Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:2.58e-22:214:78:77- Raw architecture: Response_reg:3:6.12e-28:111:111:111#Trans_reg_C:142:2.58e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000024.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23626-25606Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000024.1::G00014Context members
I4U61_RS12615I4U61_RS12620
Partner locus tags
I4U61_RS12615I4U61_RS12620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_107030145.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3FXY1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3FXY1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS12620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000024.1Sequence record reported by the local genomic context database.
Genomic interval24 953-25 606 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 626-25 606 ntGCF_015667505::NZ_JADPGJ010000024.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000024.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000024.1All displayed genes belong to this local TCS context.
Neighborhood span23 626-25 606 nt1 981 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 626 nt25 606 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS12615GCF_015667505#I4U61_RS12615
HKClassic
23 626-24 948 nt · Reverse (-)
I4U61_RS12620GCF_015667505#I4U61_RS12620
RROmpRCurrent focus
24 953-25 606 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS09595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1853568
Simplified PFAM architecture for RROC_1853568
PFAM domain coverage: 180 / 217 aa (82.9%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[143-214]
- Domain count: 2
- Matched identifier: RROC_1853568
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 143-214 ; Trans_reg_C 143-214
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS09595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key