1 Response_reg#1
1-80 aa · 80 aa · 94.1% of protein
Raw token
Response_reg:1:9.22e-21:80:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS09905
Response regulator, CheY family
Faecalibacillus intestinalis · GCF_015667505
ClassRRTypeCheYLength85 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667505#I4U61_RS09905Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length85 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage80 / 85 aa (94.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa85 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:9.22e-21:80:80:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667505::NZ_JADPGJ010000014.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16728-16985Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000014.1::G00005Context members
I4U61_RS09905
Partner locus tags
I4U61_RS09905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_230308049.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS09905Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000014.1Sequence record reported by the local genomic context database.
Genomic interval16 728-16 985 nt258 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 728-16 985 ntGCF_015667505::NZ_JADPGJ010000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000014.1All displayed genes belong to this local TCS context.
Neighborhood span16 728-16 985 nt258 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 728 nt16 985 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U61_RS09905GCF_015667505#I4U61_RS09905
RRCheYCurrent focus
16 728-16 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS05715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2475162
Simplified PFAM architecture for RROC_2475162
PFAM domain coverage: 78 / 85 aa (91.8%)
1 aa85 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-79]
- Domain count: 1
- Matched identifier: RROC_2475162
- Positioned domains: Response_reg 2-79
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS05715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key