1 HisKA#1
343-409 aa · 67 aa · 9.3% of protein
Raw token
HisKA:343:7.04e-17:409:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS07840
Histidine kinase, Hybrid
Faecalibacillus intestinalis · GCF_015667505
ClassHKTypeHybridLength718 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS07840Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length718 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 718 aa (42.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa718 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
456-574 aa · 119 aa · 16.6% of protein
Raw token
HATPase_c:456:9.3e-27:574:119:1093 Response_reg#3
597-713 aa · 117 aa · 16.3% of protein
Raw token
Response_reg:597:2.87e-29:713:117:111- Raw architecture: HisKA:343:7.04e-17:409:67:64#HATPase_c:456:9.3e-27:574:119:109#Response_reg:597:2.87e-29:713:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000009.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61220-64884Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000009.1::G00035Context members
I4U61_RS07835I4U61_RS07840
Partner locus tags
I4U61_RS07835I4U61_RS07840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_230311108.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS07840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000009.1Sequence record reported by the local genomic context database.
Genomic interval62 728-64 884 nt2 157 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 220-64 884 ntGCF_015667505::NZ_JADPGJ010000009.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000009.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span61 220-64 884 nt3 665 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 220 nt64 884 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS07835GCF_015667505#I4U61_RS07835
RRRpfG
61 220-62 719 nt · Reverse (-)
I4U61_RS07840GCF_015667505#I4U61_RS07840
HKHybridCurrent focus
62 728-64 884 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS07840The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0737194
Simplified PFAM architecture for HKOC_0737194
PFAM domain coverage: 299 / 718 aa (41.6%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[343-409] | HATPase_c[459-573] | Response_reg[597-713]
- Domain count: 3
- Matched identifier: HKOC_0737194
- Positioned domains: HisKA 343-409 ; HATPase_c 459-573 ; Response_reg 597-713
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key