1 HAMP#1
161-224 aa · 64 aa · 14.7% of protein
Raw token
HAMP:161:0.000000211:224:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS07360
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_015667505
ClassHKTypeClassicLength435 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS07360Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length435 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 435 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa435 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-294 aa · 64 aa · 14.7% of protein
Raw token
HisKA:231:0.0000000000182:294:64:643 HATPase_c#3
347-431 aa · 85 aa · 19.5% of protein
Raw token
HATPase_c:347:0.00000000305:431:94:109- Raw architecture: HAMP:161:0.000000211:224:65:69#HisKA:231:0.0000000000182:294:64:64#HATPase_c:347:0.00000000305:431:94:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000008.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span87103-89063Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000008.1::G00034Context members
I4U61_RS07355I4U61_RS07360
Partner locus tags
I4U61_RS07355I4U61_RS07360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117864699.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS07360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval87 756-89 063 nt1 308 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 103-89 063 ntGCF_015667505::NZ_JADPGJ010000008.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000008.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span87 103-89 063 nt1 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 103 nt89 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS07355GCF_015667505#I4U61_RS07355
RROmpR
87 103-87 756 nt · Forward (+)
I4U61_RS07360GCF_015667505#I4U61_RS07360
HKClassicCurrent focus
87 756-89 063 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS07360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2125339
Simplified PFAM architecture for HKOC_2125339
PFAM domain coverage: 149 / 435 aa (34.3%)
1 aa435 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[231-294] | HATPase_c[344-428]
- Domain count: 2
- Matched identifier: HKOC_2125339
- Positioned domains: HisKA 231-294 ; HATPase_c 344-428
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS07360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key