1 Response_reg#1
8-111 aa · 104 aa · 13.2% of protein
Raw token
Response_reg:8:6.79e-27:111:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS07290
Response regulator, RpfG family
Faecalibacillus intestinalis · GCF_015667505
ClassRRTypeRpfGLength788 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667505#I4U61_RS07290Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length788 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 788 aa (44.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa788 aa
Domain-by-domain annotation3 items
2 HD#2
194-300 aa · 107 aa · 13.6% of protein
Raw token
HD:194:0.00000000000145:300:107:1103 GGDEF#3
634-776 aa · 143 aa · 18.1% of protein
Raw token
GGDEF:634:9.62e-33:776:156:160- Raw architecture: Response_reg:8:6.79e-27:111:105:111#HD:194:0.00000000000145:300:107:110#GGDEF:634:9.62e-33:776:156:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667505::NZ_JADPGJ010000008.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71756-74122Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000008.1::G00033Context members
I4U61_RS07290
Partner locus tags
I4U61_RS07290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195933035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS07290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval71 756-74 122 nt2 367 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 756-74 122 ntGCF_015667505::NZ_JADPGJ010000008.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000008.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span71 756-74 122 nt2 367 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 756 nt74 122 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U61_RS07290GCF_015667505#I4U61_RS07290
RRRpfGCurrent focus
71 756-74 122 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS07290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016658
Simplified PFAM architecture for RROC_0016658
PFAM domain coverage: 382 / 788 aa (48.5%)
1 aa788 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[8-112] | HD_5[189-322] | GGDEF[634-776]
- Domain count: 3
- Matched identifier: RROC_0016658
- Positioned domains: Response_reg 8-112 ; HD_5 189-322 ; GGDEF 634-776
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS07290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key