1 HAMP#1
153-220 aa · 68 aa · 14.9% of protein
Raw token
HAMP:153:0.0000000000000578:220:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS05500
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_015667505
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS05500Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 457 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
227-292 aa · 66 aa · 14.4% of protein
Raw token
HisKA:227:0.000000000000112:292:66:643 HATPase_c#3
338-448 aa · 111 aa · 24.3% of protein
Raw token
HATPase_c:338:2.73e-34:448:111:109- Raw architecture: HAMP:153:0.0000000000000578:220:68:69#HisKA:227:0.000000000000112:292:66:64#HATPase_c:338:2.73e-34:448:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000005.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115164-117209Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000005.1::G00030Context members
I4U61_RS05500I4U61_RS05505
Partner locus tags
I4U61_RS05500I4U61_RS05505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022001505.1Primary protein accession used for annex mappings.
UniProt accessionA0A2T3G4U7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2T3G4U7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS05500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval115 164-116 537 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 164-117 209 ntGCF_015667505::NZ_JADPGJ010000005.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000005.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span115 164-117 209 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 164 nt117 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS05500GCF_015667505#I4U61_RS05500
HKClassicCurrent focus
115 164-116 537 nt · Reverse (-)
I4U61_RS05505GCF_015667505#I4U61_RS05505
RROmpR
116 538-117 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003024685#C7U54_RS04695Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1876871
Simplified PFAM architecture for HKOC_1876871
PFAM domain coverage: 224 / 457 aa (49.0%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-220] | HisKA[227-290] | HATPase_c[338-447]
- Domain count: 3
- Matched identifier: HKOC_1876871
- Positioned domains: HAMP 171-220 ; HisKA 227-290 ; HATPase_c 338-447
Cluster members and taxonomy
Representative gene: GCF_003024685#C7U54_RS04695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key