1 HAMP#1
356-422 aa · 67 aa · 10.3% of protein
Raw token
HAMP:356:0.000000000175:422:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS04890
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_015667505
ClassHKTypeClassicLength648 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS04890Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length648 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage230 / 648 aa (35.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa648 aa
Domain-by-domain annotation3 items
2 HisKA#2
441-504 aa · 64 aa · 9.9% of protein
Raw token
HisKA:441:0.00000000000014:504:64:643 HATPase_c#3
549-647 aa · 99 aa · 15.3% of protein
Raw token
HATPase_c:549:3.89e-17:647:107:109- Raw architecture: HAMP:356:0.000000000175:422:67:69#HisKA:441:0.00000000000014:504:64:64#HATPase_c:549:3.89e-17:647:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000004.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span181119-183730Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000004.1::G00028Context members
I4U61_RS04885I4U61_RS04890
Partner locus tags
I4U61_RS04885I4U61_RS04890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117792777.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS04890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval181 784-183 730 nt1 947 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span181 119-183 730 ntGCF_015667505::NZ_JADPGJ010000004.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000004.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span181 119-183 730 nt2 612 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 119 nt183 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS04885GCF_015667505#I4U61_RS04885
RROmpR
181 119-181 787 nt · Forward (+)
I4U61_RS04890GCF_015667505#I4U61_RS04890
HKClassicCurrent focus
181 784-183 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS04890The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0901896
Simplified PFAM architecture for HKOC_0901896
PFAM domain coverage: 213 / 648 aa (32.9%)
1 aa648 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[371-421] | HisKA[441-504] | HATPase_c[549-646]
- Domain count: 3
- Matched identifier: HKOC_0901896
- Positioned domains: HAMP 371-421 ; HisKA 441-504 ; HATPase_c 549-646
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key