1 Response_reg#1
17-126 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:17:2.19e-34:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS04055
Response regulator OmpR family
Faecalibacillus intestinalis · GCF_015667505
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS04055Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 30.9% of protein
Raw token
Trans_reg_C:160:6.94e-25:232:75:77- Raw architecture: Response_reg:17:2.19e-34:126:110:111#Trans_reg_C:160:6.94e-25:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000004.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61048-62801Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000004.1::G00027Context members
I4U61_RS04055I4U61_RS04060
Partner locus tags
I4U61_RS04055I4U61_RS04060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118748638.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS04055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval61 048-61 758 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 048-62 801 ntGCF_015667505::NZ_JADPGJ010000004.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000004.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span61 048-62 801 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 048 nt62 801 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS04055GCF_015667505#I4U61_RS04055
RROmpRCurrent focus
61 048-61 758 nt · Forward (+)
I4U61_RS04060GCF_015667505#I4U61_RS04060
HKClassic
61 758-62 801 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015097455#Fi14EGH31_RS06725Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1000396
Simplified PFAM architecture for RROC_1000396
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_1000396
- Positioned domains: Response_reg 17-125 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_015097455#Fi14EGH31_RS06725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key