1 HisKA#1
53-113 aa · 61 aa · 23.4% of protein
Raw token
HisKA:53:0.0000000000131:113:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U61_RS00640
Histidine kinase, Classic
Faecalibacillus intestinalis · GCF_015667505
ClassHKTypeClassicLength261 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667505#I4U61_RS00640Stable P2CS identifier used across views.
GenomeGCF_015667505Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 261 aa (61.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
154-253 aa · 100 aa · 38.3% of protein
Raw token
HATPase_c:154:3.61e-21:253:105:109- Raw architecture: HisKA:53:0.0000000000131:113:63:64#HATPase_c:154:3.61e-21:253:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667505::NZ_JADPGJ010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116808-118413Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667505::NZ_JADPGJ010000001.1::G00011Context members
I4U61_RS00630I4U61_RS00640
Partner locus tags
I4U61_RS00630I4U61_RS00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195932555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U61_RS00640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval117 628-118 413 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 808-118 413 ntGCF_015667505::NZ_JADPGJ010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667505::NZ_JADPGJ010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span116 808-118 413 nt1 606 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 808 nt118 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U61_RS00630GCF_015667505#I4U61_RS00630
RROmpR
116 808-117 473 nt · Forward (+)
I4U61_RS00640GCF_015667505#I4U61_RS00640
HKClassicCurrent focus
117 628-118 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667505#I4U61_RS00640The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2913468
Simplified PFAM architecture for HKOC_2913468
PFAM domain coverage: 158 / 261 aa (60.5%)
1 aa261 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[56-112] | HATPase_c[154-254]
- Domain count: 2
- Matched identifier: HKOC_2913468
- Positioned domains: HisKA 56-112 ; HATPase_c 154-254
Cluster members and taxonomy
Representative gene: GCF_015667505#I4U61_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 982 626 · GCF_015667505
AssemblyASM1566750v1 · Scaffoldhaploid
Genome composition2 831 202 bp · 29,5% GCFaecalibacillus intestinalis
Signal transduction countsGenes 56 · HK 21 · RR 34CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key