1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:4.11e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H44_RS15600
Response regulator OmpR family
Thomasclavelia ramosa · GCF_015560315
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560315#I2H44_RS15600Stable P2CS identifier used across views.
GenomeGCF_015560315Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:153:9.16e-31:227:75:77- Raw architecture: Response_reg:5:4.11e-39:114:111:111#Trans_reg_C:153:9.16e-31:227:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560315::NZ_JADMRP010000034.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31416-33186Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560315::NZ_JADMRP010000034.1::G00018Context members
I2H44_RS15600I2H44_RS15605
Partner locus tags
I2H44_RS15600I2H44_RS15605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561776.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H44_RS15600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRP010000034.1Sequence record reported by the local genomic context database.
Genomic interval31 416-32 108 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 416-33 186 ntGCF_015560315::NZ_JADMRP010000034.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560315::NZ_JADMRP010000034.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRP010000034.1All displayed genes belong to this local TCS context.
Neighborhood span31 416-33 186 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 416 nt33 186 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2H44_RS15600GCF_015560315#I2H44_RS15600
RROmpRCurrent focus
31 416-32 108 nt · Forward (+)
I2H44_RS15605GCF_015560315#I2H44_RS15605
HKClassic
32 101-33 186 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS09455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1211250
Simplified PFAM architecture for RROC_1211250
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1211250
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_015560315
AssemblyASM1556031v1 · Scaffoldhaploid
Genome composition3 541 385 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 24 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key