1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:5.83e-135:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H44_RS08930
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_015560315
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_015560315#I2H44_RS08930Stable P2CS identifier used across views.
GenomeGCF_015560315Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 896 aa (43.5%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation3 items
2 HisKA#2
668-735 aa · 68 aa · 7.6% of protein
Raw token
HisKA:668:0.00000000000236:735:68:643 HATPase_c#3
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:2.49e-29:891:112:109- Raw architecture: KdpD:23:5.83e-135:232:210:210#HisKA:668:0.00000000000236:735:68:64#HATPase_c:780:2.49e-29:891:112:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_015560315::NZ_JADMRP010000012.1::G00002
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span67364-72938Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560315::NZ_JADMRP010000012.1::G00002Context members
I2H44_RS08915I2H44_RS08920I2H44_RS08925I2H44_RS08930
Partner locus tags
I2H44_RS08915I2H44_RS08920I2H44_RS08925I2H44_RS08930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117561342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H44_RS08930Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRP010000012.1Sequence record reported by the local genomic context database.
Genomic interval70 248-72 938 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 364-72 938 ntGCF_015560315::NZ_JADMRP010000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560315::NZ_JADMRP010000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span67 364-72 938 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 364 nt72 938 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
I2H44_RS08915GCF_015560315#I2H44_RS08915
RROmpR
67 364-68 047 nt · Reverse (-)
I2H44_RS08920GCF_015560315#I2H44_RS08920
HKClassic
68 040-69 500 nt · Reverse (-)
I2H44_RS08925GCF_015560315#I2H44_RS08925
RROmpR
69 545-70 255 nt · Reverse (-)
I2H44_RS08930GCF_015560315#I2H44_RS08930
HKClassicCurrent focus
70 248-72 938 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS02720Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0413824
Simplified PFAM architecture for HKOC_0413824
PFAM domain coverage: 495 / 896 aa (55.2%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[399-504] | HisKA[668-735] | HATPase_c[780-890]
- Domain count: 4
- Matched identifier: HKOC_0413824
- Positioned domains: KdpD 23-232 ; DUF4118 399-504 ; HisKA 668-735 ; HATPase_c 780-890
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_015560315
AssemblyASM1556031v1 · Scaffoldhaploid
Genome composition3 541 385 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 24 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key