1 Response_reg#1
26-111 aa · 86 aa · 38.6% of protein
Raw token
Response_reg:26:9.34e-17:111:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H25_RS03980
Response regulator NarL family
Bifidobacterium adolescentis · GCF_015560095
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015560095#I2H25_RS03980Stable P2CS identifier used across views.
GenomeGCF_015560095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 223 aa (63.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-216 aa · 56 aa · 25.1% of protein
Raw token
HTH_LUXR:161:0.00000000000000178:216:56:58- Raw architecture: Response_reg:26:9.34e-17:111:90:111#HTH_LUXR:161:0.00000000000000178:216:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015560095::NZ_JADMRD010000002.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span337139-337810Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560095::NZ_JADMRD010000002.1::G00005Context members
I2H25_RS03980
Partner locus tags
I2H25_RS03980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229089138.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H25_RS03980Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRD010000002.1Sequence record reported by the local genomic context database.
Genomic interval337 139-337 810 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span337 139-337 810 ntGCF_015560095::NZ_JADMRD010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560095::NZ_JADMRD010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRD010000002.1All displayed genes belong to this local TCS context.
Neighborhood span337 139-337 810 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
337 139 nt337 810 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2H25_RS03980GCF_015560095#I2H25_RS03980
RRNarLCurrent focus
337 139-337 810 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015560095#I2H25_RS03980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1608661
Simplified PFAM architecture for RROC_1608661
PFAM domain coverage: 143 / 223 aa (64.1%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[26-113] | GerE[162-216]
- Domain count: 2
- Matched identifier: RROC_1608661
- Positioned domains: Response_reg 26-113 ; GerE 162-216
Cluster members and taxonomy
Representative gene: GCF_015560095#I2H25_RS03980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_015560095
AssemblyASM1556009v1 · Contighaploid
Genome composition2 265 784 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key