1 Response_reg#1
4-118 aa · 115 aa · 21.7% of protein
Raw token
Response_reg:4:1.15e-29:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS12940
Response regulator, unclassified
Roseburia faecis · GCF_015559645
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015559645#I2H29_RS12940Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 529 aa (37.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000124:475:42:423 HTH_AraC#3
487-525 aa · 39 aa · 7.4% of protein
Raw token
HTH_AraC:487:0.0000144:525:39:42- Raw architecture: Response_reg:4:1.15e-29:118:115:111#HTH_AraC:434:0.000000124:475:42:42#HTH_AraC:487:0.0000144:525:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015559645::NZ_JADMQJ010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44200-47606Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000012.1::G00004Context members
I2H29_RS12940I2H29_RS12945
Partner locus tags
I2H29_RS12940I2H29_RS12945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138345768.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS12940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000012.1Sequence record reported by the local genomic context database.
Genomic interval44 200-45 789 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 200-47 606 ntGCF_015559645::NZ_JADMQJ010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000012.1All displayed genes belong to this local TCS context.
Neighborhood span44 200-47 606 nt3 407 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 200 nt47 606 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2H29_RS12940GCF_015559645#I2H29_RS12940
RRunclassifiedCurrent focus
44 200-45 789 nt · Reverse (-)
I2H29_RS12945GCF_015559645#I2H29_RS12945
HKClassic
45 783-47 606 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS06050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113320
Simplified PFAM architecture for RROC_0113320
PFAM domain coverage: 193 / 529 aa (36.5%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0113320
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS06050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key