1 Response_reg#1
4-115 aa · 112 aa · 46.9% of protein
Raw token
Response_reg:4:0.00000000000277:115:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS08830
Response regulator LytTR family
Roseburia faecis · GCF_015559645
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015559645#I2H29_RS08830Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 239 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-227 aa · 85 aa · 35.6% of protein
Raw token
LytTR:143:0.00000000000103:227:90:98- Raw architecture: Response_reg:4:0.00000000000277:115:118:111#LytTR:143:0.00000000000103:227:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015559645::NZ_JADMQJ010000006.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42326-43045Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000006.1::G00052Context members
I2H29_RS08830
Partner locus tags
I2H29_RS08830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175298.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KJ17Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KJ17_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS08830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval42 326-43 045 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 326-43 045 ntGCF_015559645::NZ_JADMQJ010000006.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000006.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span42 326-43 045 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 326 nt43 045 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2H29_RS08830GCF_015559645#I2H29_RS08830
RRLytTRCurrent focus
42 326-43 045 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS03185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0915373
Simplified PFAM architecture for RROC_0915373
PFAM domain coverage: 201 / 239 aa (84.1%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[143-230]
- Domain count: 2
- Matched identifier: RROC_0915373
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 143-230 ; LytTR 143-230
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS03185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key