1 Response_reg#1
8-121 aa · 114 aa · 22.1% of protein
Raw token
Response_reg:8:2.09e-34:121:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS07175
Response regulator, unclassified
Roseburia faecis · GCF_015559645
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015559645#I2H29_RS07175Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 516 aa (29.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
475-512 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:475:0.00000884:512:38:42- Raw architecture: Response_reg:8:2.09e-34:121:114:111#HTH_AraC:475:0.00000884:512:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015559645::NZ_JADMQJ010000005.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34895-38241Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000005.1::G00049Context members
I2H29_RS07175I2H29_RS07180
Partner locus tags
I2H29_RS07175I2H29_RS07180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207734089.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS07175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval34 895-36 445 nt1 551 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 895-38 241 ntGCF_015559645::NZ_JADMQJ010000005.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000005.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span34 895-38 241 nt3 347 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 895 nt38 241 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2H29_RS07175GCF_015559645#I2H29_RS07175
RRunclassifiedCurrent focus
34 895-36 445 nt · Reverse (-)
I2H29_RS07180GCF_015559645#I2H29_RS07180
HKClassic
36 463-38 241 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550045#I2B60_RS00625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134979
Simplified PFAM architecture for RROC_0134979
PFAM domain coverage: 192 / 516 aa (37.2%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[8-121] | HTH_18[435-512]
- Domain count: 2
- Matched identifier: RROC_0134979
- Positioned domains: Response_reg 8-121 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_015550045#I2B60_RS00625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key