1 Response_reg#1
19-113 aa · 95 aa · 73.6% of protein
Raw token
Response_reg:19:0.0000265:113:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS04895
Response regulator, CheY family
Roseburia faecis · GCF_015559645
ClassRRTypeCheYLength129 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015559645#I2H29_RS04895Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length129 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage95 / 129 aa (73.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa129 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:19:0.0000265:113:99:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015559645::NZ_JADMQJ010000003.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span211159-211548Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000003.1::G00041Context members
I2H29_RS04895
Partner locus tags
I2H29_RS04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068125.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WRP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WRP6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS04895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval211 159-211 548 nt390 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span211 159-211 548 ntGCF_015559645::NZ_JADMQJ010000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span211 159-211 548 nt390 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
211 159 nt211 548 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2H29_RS04895GCF_015559645#I2H29_RS04895
RRCheYCurrent focus
211 159-211 548 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS10015Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2330733
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS10015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key