1 Response_reg#1
3-104 aa · 102 aa · 71.8% of protein
Raw token
Response_reg:3:1.4e-28:104:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS01015
Response regulator, CheY family
Roseburia faecis · GCF_015559645
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015559645#I2H29_RS01015Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 142 aa (71.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.4e-28:104:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015559645::NZ_JADMQJ010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span193676-195902Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000001.1::G00017Context members
I2H29_RS01010I2H29_RS01015
Partner locus tags
I2H29_RS01010I2H29_RS01015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195591977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS01015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval195 474-195 902 nt429 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span193 676-195 902 ntGCF_015559645::NZ_JADMQJ010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span193 676-195 902 nt2 227 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 676 nt195 902 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2H29_RS01010GCF_015559645#I2H29_RS01010
HKClassic
193 676-195 496 nt · Forward (+)
I2H29_RS01015GCF_015559645#I2H29_RS01015
RRCheYCurrent focus
195 474-195 902 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015559645#I2H29_RS01015The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2260565
Simplified PFAM architecture for RROC_2260565
PFAM domain coverage: 104 / 142 aa (73.2%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-106]
- Domain count: 1
- Matched identifier: RROC_2260565
- Positioned domains: Response_reg 3-106
Cluster members and taxonomy
Representative gene: GCF_015559645#I2H29_RS01015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key