1 Response_reg#1
4-113 aa · 110 aa · 35.9% of protein
Raw token
Response_reg:4:3.34e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G32_RS17355
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_015557345
ClassRRTypeunclassifiedLength306 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557345#I2G32_RS17355Stable P2CS identifier used across views.
GenomeGCF_015557345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 306 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.34e-30:113:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557345::NZ_JADNOC010000015.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9839-10759Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557345::NZ_JADNOC010000015.1::G00006Context members
I2G32_RS17355
Partner locus tags
I2G32_RS17355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243246723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G32_RS17355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOC010000015.1Sequence record reported by the local genomic context database.
Genomic interval9 839-10 759 nt921 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 839-10 759 ntGCF_015557345::NZ_JADNOC010000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557345::NZ_JADNOC010000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOC010000015.1All displayed genes belong to this local TCS context.
Neighborhood span9 839-10 759 nt921 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 839 nt10 759 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G32_RS17355GCF_015557345#I2G32_RS17355
RRunclassifiedCurrent focus
9 839-10 759 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865345#CDL23_RS10970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143437
Simplified PFAM architecture for RROC_0143437
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0143437
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 421-499 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_002865345#CDL23_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015557345
AssemblyASM1555734v1 · Scaffoldhaploid
Genome composition3 548 074 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 88 · HK 43 · RR 45CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key