1 HisKA#1
186-242 aa · 57 aa · 14.4% of protein
Raw token
HisKA:186:0.00000000000621:242:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G32_RS16055
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015557345
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557345#I2G32_RS16055Stable P2CS identifier used across views.
GenomeGCF_015557345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 395 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa395 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
287-392 aa · 106 aa · 26.8% of protein
Raw token
HATPase_c:287:6.92e-23:392:107:109- Raw architecture: HisKA:186:0.00000000000621:242:59:64#HATPase_c:287:6.92e-23:392:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557345::NZ_JADNOC010000043.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span909-2764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557345::NZ_JADNOC010000043.1::G00040Context members
I2G32_RS16050I2G32_RS16055
Partner locus tags
I2G32_RS16050I2G32_RS16055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149736.1Primary protein accession used for annex mappings.
UniProt accessionA0A174L8V1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174L8V1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G32_RS16055Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOC010000043.1Sequence record reported by the local genomic context database.
Genomic interval1 577-2 764 nt1 188 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span909-2 764 ntGCF_015557345::NZ_JADNOC010000043.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557345::NZ_JADNOC010000043.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOC010000043.1All displayed genes belong to this local TCS context.
Neighborhood span909-2 764 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
909 nt2 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G32_RS16050GCF_015557345#I2G32_RS16050
RROmpR
909-1 580 nt · Forward (+)
I2G32_RS16055GCF_015557345#I2G32_RS16055
HKClassicCurrent focus
1 577-2 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS04110Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2488285
Simplified PFAM architecture for HKOC_2488285
PFAM domain coverage: 161 / 395 aa (40.8%)
1 aa395 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[186-242] | HATPase_c[288-391]
- Domain count: 2
- Matched identifier: HKOC_2488285
- Positioned domains: HisKA 186-242 ; HATPase_c 288-391
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS04110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015557345
AssemblyASM1555734v1 · Scaffoldhaploid
Genome composition3 548 074 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 88 · HK 43 · RR 45CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key