1 Response_reg#1
3-103 aa · 101 aa · 46.1% of protein
Raw token
Response_reg:3:3.15e-25:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G13_RS05990
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_015557305
ClassRRTypeNarLLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557305#I2G13_RS05990Stable P2CS identifier used across views.
GenomeGCF_015557305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 219 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-213 aa · 56 aa · 25.6% of protein
Raw token
HTH_LUXR:158:3.29e-21:213:56:58- Raw architecture: Response_reg:3:3.15e-25:103:101:111#HTH_LUXR:158:3.29e-21:213:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557305::NZ_JADNOA010000001.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1438186-1438845Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557305::NZ_JADNOA010000001.1::G00012Context members
I2G13_RS05990
Partner locus tags
I2G13_RS05990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195524192.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G13_RS05990Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOA010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 438 186-1 438 845 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 438 186-1 438 845 ntGCF_015557305::NZ_JADNOA010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557305::NZ_JADNOA010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 438 186-1 438 845 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 438 186 nt1 438 845 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G13_RS05990GCF_015557305#I2G13_RS05990
RRNarLCurrent focus
1 438 186-1 438 845 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557305#I2G13_RS05990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1784656
Simplified PFAM architecture for RROC_1784656
PFAM domain coverage: 156 / 219 aa (71.2%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1784656
- Positioned domains: Response_reg 3-104 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_015557305#I2G13_RS05990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_015557305
AssemblyASM1555730v1 · Scaffoldhaploid
Genome composition2 228 306 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key