1 Response_reg#1
19-131 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:19:1.66e-28:131:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G13_RS05980
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_015557305
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557305#I2G13_RS05980Stable P2CS identifier used across views.
GenomeGCF_015557305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 233 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.5% of protein
Raw token
HTH_LUXR:168:1.12e-16:224:58:58- Raw architecture: Response_reg:19:1.66e-28:131:113:111#HTH_LUXR:168:1.12e-16:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557305::NZ_JADNOA010000001.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1435276-1435977Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557305::NZ_JADNOA010000001.1::G00011Context members
I2G13_RS05980
Partner locus tags
I2G13_RS05980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195524023.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G13_RS05980Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOA010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 435 276-1 435 977 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 435 276-1 435 977 ntGCF_015557305::NZ_JADNOA010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557305::NZ_JADNOA010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 435 276-1 435 977 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 435 276 nt1 435 977 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G13_RS05980GCF_015557305#I2G13_RS05980
RRNarLCurrent focus
1 435 276-1 435 977 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557305#I2G13_RS05980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1097165
Simplified PFAM architecture for RROC_1097165
PFAM domain coverage: 164 / 233 aa (70.4%)
1 aa233 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[18-130] | Sigma70_r4_2[162-212]
- Domain count: 2
- Matched identifier: RROC_1097165
- Positioned domains: Response_reg 18-130 ; Sigma70_r4_2 162-212
Cluster members and taxonomy
Representative gene: GCF_015557305#I2G13_RS05980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_015557305
AssemblyASM1555730v1 · Scaffoldhaploid
Genome composition2 228 306 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 23 · HK 9 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key