1 HisKA#1
35-86 aa · 52 aa · 20.2% of protein
Raw token
HisKA:35:0.000000155:86:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS13470
Histidine kinase, Classic
Dorea longicatena · GCF_015556385
ClassHKTypeClassicLength258 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015556385#I2F79_RS13470Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length258 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 258 aa (66.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa258 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
137-256 aa · 120 aa · 46.5% of protein
Raw token
HATPase_c:137:5.51e-33:256:123:109- Raw architecture: HisKA:35:0.000000155:86:52:64#HATPase_c:137:5.51e-33:256:123:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015556385::NZ_JADNMG010000018.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span28280-29056Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000018.1::G00006Context members
I2F79_RS13470
Partner locus tags
I2F79_RS13470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022416432.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SPM3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SPM3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS13470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000018.1Sequence record reported by the local genomic context database.
Genomic interval28 280-29 056 nt777 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 280-29 056 ntGCF_015556385::NZ_JADNMG010000018.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000018.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000018.1All displayed genes belong to this local TCS context.
Neighborhood span28 280-29 056 nt777 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 280 nt29 056 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F79_RS13470GCF_015556385#I2F79_RS13470
HKClassicCurrent focus
28 280-29 056 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS05465Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2915471
Simplified PFAM architecture for HKOC_2915471
PFAM domain coverage: 171 / 258 aa (66.3%)
1 aa258 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[35-87] | HATPase_c[138-255]
- Domain count: 2
- Matched identifier: HKOC_2915471
- Positioned domains: HisKA 35-87 ; HATPase_c 138-255
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS05465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key