1 HAMP#1
292-361 aa · 70 aa · 11.8% of protein
Raw token
HAMP:292:0.000000000000242:361:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS12510
Histidine kinase, Classic
Dorea longicatena · GCF_015556385
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015556385#I2F79_RS12510Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 592 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-455 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:376:1.62e-34:455:80:803 HATPase_c#3
471-583 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:471:0.0000000325:583:114:109- Raw architecture: HAMP:292:0.000000000000242:361:70:69#His_kinase:376:1.62e-34:455:80:80#HATPase_c:471:0.0000000325:583:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015556385::NZ_JADNMG010000015.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34103-37470Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000015.1::G00004Context members
I2F79_RS12505I2F79_RS12510
Partner locus tags
I2F79_RS12505I2F79_RS12510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173788315.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP7DY38Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP7DY38_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS12510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000015.1Sequence record reported by the local genomic context database.
Genomic interval35 692-37 470 nt1 779 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 103-37 470 ntGCF_015556385::NZ_JADNMG010000015.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000015.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000015.1All displayed genes belong to this local TCS context.
Neighborhood span34 103-37 470 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 103 nt37 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F79_RS12505GCF_015556385#I2F79_RS12505
RRunclassified
34 103-35 695 nt · Forward (+)
I2F79_RS12510GCF_015556385#I2F79_RS12510
HKClassicCurrent focus
35 692-37 470 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301275#G4307_RS13340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1101426
Simplified PFAM architecture for HKOC_1101426
PFAM domain coverage: 241 / 592 aa (40.7%)
1 aa592 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[312-361] | His_kinase[377-453] | HATPase_c[471-584]
- Domain count: 3
- Matched identifier: HKOC_1101426
- Positioned domains: HAMP 312-361 ; His_kinase 377-453 ; HATPase_c 471-584
Cluster members and taxonomy
Representative gene: GCF_013301275#G4307_RS13340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key