1 Response_reg#1
8-116 aa · 109 aa · 20.6% of protein
Raw token
Response_reg:8:1.31e-27:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS12505
Response regulator, unclassified
Dorea longicatena · GCF_015556385
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015556385#I2F79_RS12505Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 530 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000671:475:42:423 HTH_AraC#3
493-524 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:493:0.000000489:524:32:42- Raw architecture: Response_reg:8:1.31e-27:116:109:111#HTH_AraC:434:0.000000671:475:42:42#HTH_AraC:493:0.000000489:524:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015556385::NZ_JADNMG010000015.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34103-37470Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000015.1::G00004Context members
I2F79_RS12505I2F79_RS12510
Partner locus tags
I2F79_RS12505I2F79_RS12510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022415822.1Primary protein accession used for annex mappings.
UniProt accessionA0A174FEH5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174FEH5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS12505Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000015.1Sequence record reported by the local genomic context database.
Genomic interval34 103-35 695 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 103-37 470 ntGCF_015556385::NZ_JADNMG010000015.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000015.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000015.1All displayed genes belong to this local TCS context.
Neighborhood span34 103-37 470 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 103 nt37 470 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F79_RS12505GCF_015556385#I2F79_RS12505
RRunclassifiedCurrent focus
34 103-35 695 nt · Forward (+)
I2F79_RS12510GCF_015556385#I2F79_RS12510
HKClassic
35 692-37 470 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031294925#Q3X47_RS00520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0090637
Simplified PFAM architecture for RROC_0090637
PFAM domain coverage: 189 / 540 aa (35.0%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[17-127] | HTH_18[459-536]
- Domain count: 2
- Matched identifier: RROC_0090637
- Positioned domains: Response_reg 17-127 ; HTH_18 459-536
Cluster members and taxonomy
Representative gene: GCF_031294925#Q3X47_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key