1 Response_reg#1
6-119 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:6:2.9e-30:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS11545
Response regulator, unclassified
Dorea longicatena · GCF_015556385
ClassRRTypeunclassifiedLength543 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015556385#I2F79_RS11545Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length543 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 543 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa543 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
452-489 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:452:0.000000000367:489:38:423 HTH_AraC#3
501-538 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:501:0.000000944:538:38:42- Raw architecture: Response_reg:6:2.9e-30:119:114:111#HTH_AraC:452:0.000000000367:489:38:42#HTH_AraC:501:0.000000944:538:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015556385::NZ_JADNMG010000013.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45608-48730Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000013.1::G00003Context members
I2F79_RS11540I2F79_RS11545
Partner locus tags
I2F79_RS11540I2F79_RS11545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_130096402.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8S0L1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8S0L1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS11545Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000013.1Sequence record reported by the local genomic context database.
Genomic interval47 099-48 730 nt1 632 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 608-48 730 ntGCF_015556385::NZ_JADNMG010000013.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000013.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000013.1All displayed genes belong to this local TCS context.
Neighborhood span45 608-48 730 nt3 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 608 nt48 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F79_RS11540GCF_015556385#I2F79_RS11540
HKClassic
45 608-47 095 nt · Reverse (-)
I2F79_RS11545GCF_015556385#I2F79_RS11545
RRunclassifiedCurrent focus
47 099-48 730 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167275#EAI84_RS03490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0084042
Simplified PFAM architecture for RROC_0084042
PFAM domain coverage: 193 / 543 aa (35.5%)
1 aa543 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[461-540]
- Domain count: 2
- Matched identifier: RROC_0084042
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 461-540 ; HTH_18 461-540
Cluster members and taxonomy
Representative gene: GCF_004167275#EAI84_RS03490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key