1 HisKA_3#1
242-309 aa · 68 aa · 15.5% of protein
Raw token
HisKA_3:242:1.12e-24:309:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS08695
Histidine kinase, Classic
Dorea longicatena · GCF_015556385
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015556385#I2F79_RS08695Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 440 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-431 aa · 83 aa · 18.9% of protein
Raw token
HATPase_c:349:0.000000000106:431:101:109- Raw architecture: HisKA_3:242:1.12e-24:309:68:68#HATPase_c:349:0.000000000106:431:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015556385::NZ_JADNMG010000008.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1526-3512Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000008.1::G00029Context members
I2F79_RS08690I2F79_RS08695
Partner locus tags
I2F79_RS08690I2F79_RS08695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243275848.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS08695Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000008.1Sequence record reported by the local genomic context database.
Genomic interval2 190-3 512 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 526-3 512 ntGCF_015556385::NZ_JADNMG010000008.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000008.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000008.1All displayed genes belong to this local TCS context.
Neighborhood span1 526-3 512 nt1 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 526 nt3 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F79_RS08690GCF_015556385#I2F79_RS08690
RRNarL
1 526-2 197 nt · Reverse (-)
I2F79_RS08695GCF_015556385#I2F79_RS08695
HKClassicCurrent focus
2 190-3 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015556385#I2F79_RS08695The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2076054
Simplified PFAM architecture for HKOC_2076054
PFAM domain coverage: 118 / 440 aa (26.8%)
1 aa440 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[242-309] | HATPase_c[349-398]
- Domain count: 2
- Matched identifier: HKOC_2076054
- Positioned domains: HisKA_3 242-309 ; HATPase_c 349-398
Cluster members and taxonomy
Representative gene: GCF_015556385#I2F79_RS08695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key