1 HisKA#1
121-174 aa · 54 aa · 15.9% of protein
Raw token
HisKA:121:0.0000328:174:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS08255
Histidine kinase, Classic
Dorea longicatena · GCF_015556385
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015556385#I2F79_RS08255Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 339 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
219-332 aa · 114 aa · 33.6% of protein
Raw token
HATPase_c:219:5.36e-22:332:114:109- Raw architecture: HisKA:121:0.0000328:174:60:64#HATPase_c:219:5.36e-22:332:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015556385::NZ_JADNMG010000007.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40208-41910Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000007.1::G00027Context members
I2F79_RS08250I2F79_RS08255
Partner locus tags
I2F79_RS08250I2F79_RS08255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161169981.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N9JU35Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N9JU35_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS08255Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000007.1Sequence record reported by the local genomic context database.
Genomic interval40 891-41 910 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 208-41 910 ntGCF_015556385::NZ_JADNMG010000007.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000007.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000007.1All displayed genes belong to this local TCS context.
Neighborhood span40 208-41 910 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 208 nt41 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F79_RS08250GCF_015556385#I2F79_RS08250
RROmpR
40 208-40 894 nt · Forward (+)
I2F79_RS08255GCF_015556385#I2F79_RS08255
HKClassicCurrent focus
40 891-41 910 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875705#GT580_RS04930Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840544
Simplified PFAM architecture for HKOC_2840544
PFAM domain coverage: 113 / 339 aa (33.3%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[220-332]
- Domain count: 1
- Matched identifier: HKOC_2840544
- Positioned domains: HATPase_c 220-332
Cluster members and taxonomy
Representative gene: GCF_009875705#GT580_RS04930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key