1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:0.00000000000000189:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F79_RS06610
Response regulator LytTR family
Dorea longicatena · GCF_015556385
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015556385#I2F79_RS06610Stable P2CS identifier used across views.
GenomeGCF_015556385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 237 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.4% of protein
Raw token
LytTR:139:2.6e-19:229:97:98- Raw architecture: Response_reg:6:0.00000000000000189:115:112:111#LytTR:139:2.6e-19:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015556385::NZ_JADNMG010000005.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span123665-124378Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015556385::NZ_JADNMG010000005.1::G00022Context members
I2F79_RS06610
Partner locus tags
I2F79_RS06610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513340.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XBI4Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XBI4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F79_RS06610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNMG010000005.1Sequence record reported by the local genomic context database.
Genomic interval123 665-124 378 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span123 665-124 378 ntGCF_015556385::NZ_JADNMG010000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015556385::NZ_JADNMG010000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNMG010000005.1All displayed genes belong to this local TCS context.
Neighborhood span123 665-124 378 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 665 nt124 378 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F79_RS06610GCF_015556385#I2F79_RS06610
RRLytTRCurrent focus
123 665-124 378 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS04260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961891
Simplified PFAM architecture for RROC_0961891
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0961891
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015556385
AssemblyASM1555638v1 · Scaffoldhaploid
Genome composition3 190 945 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 66 · HK 33 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key