1 Response_reg#1
9-133 aa · 125 aa · 50.2% of protein
Raw token
Response_reg:9:3.24e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E65_RS06795
Response regulator NarL family
Bifidobacterium adolescentis · GCF_015555595
ClassRRTypeNarLLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015555595#I2E65_RS06795Stable P2CS identifier used across views.
GenomeGCF_015555595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 249 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
186-243 aa · 58 aa · 23.3% of protein
Raw token
HTH_LUXR:186:2.65e-23:243:58:58- Raw architecture: Response_reg:9:3.24e-28:133:125:111#HTH_LUXR:186:2.65e-23:243:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015555595::NZ_JADNKQ010000003.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71689-75124Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015555595::NZ_JADNKQ010000003.1::G00012Context members
I2E65_RS06795I2E65_RS06800
Partner locus tags
I2E65_RS06795I2E65_RS06800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195482269.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E65_RS06795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNKQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval71 689-72 438 nt750 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 689-75 124 ntGCF_015555595::NZ_JADNKQ010000003.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015555595::NZ_JADNKQ010000003.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNKQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span71 689-75 124 nt3 436 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 689 nt75 124 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E65_RS06795GCF_015555595#I2E65_RS06795
RRNarLCurrent focus
71 689-72 438 nt · Reverse (-)
I2E65_RS06800GCF_015555595#I2E65_RS06800
HKClassic
72 515-75 124 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555595#I2E65_RS06795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0736504
Simplified PFAM architecture for RROC_0736504
PFAM domain coverage: 180 / 249 aa (72.3%)
1 aa249 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[188-243]
- Domain count: 2
- Matched identifier: RROC_0736504
- Positioned domains: Response_reg 9-132 ; GerE 188-243
Cluster members and taxonomy
Representative gene: GCF_015555595#I2E65_RS06795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_015555595
AssemblyASM1555559v1 · Contighaploid
Genome composition2 174 863 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key