1 Response_reg#1
9-119 aa · 111 aa · 45.7% of protein
Raw token
Response_reg:9:2.41e-37:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E65_RS06570
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_015555595
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015555595#I2E65_RS06570Stable P2CS identifier used across views.
GenomeGCF_015555595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 243 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-238 aa · 86 aa · 35.4% of protein
Raw token
Trans_reg_C:153:7.62e-29:238:86:77- Raw architecture: Response_reg:9:2.41e-37:119:111:111#Trans_reg_C:153:7.62e-29:238:86:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015555595::NZ_JADNKQ010000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13607-16194Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015555595::NZ_JADNKQ010000003.1::G00010Context members
I2E65_RS06570I2E65_RS06575
Partner locus tags
I2E65_RS06570I2E65_RS06575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033499171.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DMJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DMJ8_BIFADDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E65_RS06570Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNKQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval13 607-14 338 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 607-16 194 ntGCF_015555595::NZ_JADNKQ010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015555595::NZ_JADNKQ010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNKQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span13 607-16 194 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 607 nt16 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E65_RS06570GCF_015555595#I2E65_RS06570
RROmpRCurrent focus
13 607-14 338 nt · Forward (+)
I2E65_RS06575GCF_015555595#I2E65_RS06575
HKClassic
14 413-16 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741415#BSTER_RS07910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0826281
Simplified PFAM architecture for RROC_0826281
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-119] | Trans_reg_C[153-237]
- Domain count: 2
- Matched identifier: RROC_0826281
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; Trans_reg_C 153-237 ; Trans_reg_C 153-237
Cluster members and taxonomy
Representative gene: GCF_000741415#BSTER_RS07910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_015555595
AssemblyASM1555559v1 · Contighaploid
Genome composition2 174 863 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key