1 Response_reg#1
6-110 aa · 105 aa · 43.4% of protein
Raw token
Response_reg:6:0.00000000000000235:110:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E60_RS08515
Response regulator LytTR family
Anaerostipes hadrus · GCF_015554695
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015554695#I2E60_RS08515Stable P2CS identifier used across views.
GenomeGCF_015554695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 242 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-235 aa · 91 aa · 37.6% of protein
Raw token
LytTR:145:5.38e-16:235:96:98- Raw architecture: Response_reg:6:0.00000000000000235:110:107:111#LytTR:145:5.38e-16:235:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015554695::NZ_JADNJB010000018.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48993-49721Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015554695::NZ_JADNJB010000018.1::G00006Context members
I2E60_RS08515
Partner locus tags
I2E60_RS08515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_226816109.1Primary protein accession used for annex mappings.
UniProt accessionA0A174JX11Primary UniProt accession resolved in the annex database.
UniProt IDA0A174JX11_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E60_RS08515Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNJB010000018.1Sequence record reported by the local genomic context database.
Genomic interval48 993-49 721 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 993-49 721 ntGCF_015554695::NZ_JADNJB010000018.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015554695::NZ_JADNJB010000018.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNJB010000018.1All displayed genes belong to this local TCS context.
Neighborhood span48 993-49 721 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 993 nt49 721 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2E60_RS08515GCF_015554695#I2E60_RS08515
RRLytTRCurrent focus
48 993-49 721 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404835#ARA33_RS02070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0845820
Simplified PFAM architecture for RROC_0845820
PFAM domain coverage: 203 / 242 aa (83.9%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[145-234]
- Domain count: 2
- Matched identifier: RROC_0845820
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 145-234 ; LytTR 145-234
Cluster members and taxonomy
Representative gene: GCF_001404835#ARA33_RS02070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_015554695
AssemblyASM1555469v1 · Scaffoldhaploid
Genome composition3 245 115 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 53 · HK 28 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key