1 HisKA#1
269-324 aa · 56 aa · 11.5% of protein
Raw token
HisKA:269:0.00000495:324:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F58_RS19050
Histidine kinase, Classic
[Clostridium] symbiosum · GCF_015553815
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553815#I2F58_RS19050Stable P2CS identifier used across views.
GenomeGCF_015553815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 486 aa (33.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
370-477 aa · 108 aa · 22.2% of protein
Raw token
HATPase_c:370:9.63e-19:477:112:109- Raw architecture: HisKA:269:0.00000495:324:56:64#HATPase_c:370:9.63e-19:477:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553815::NZ_JADNHH010000061.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151-2221Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553815::NZ_JADNHH010000061.1::G00056Context members
I2F58_RS19050I2F58_RS19055
Partner locus tags
I2F58_RS19050I2F58_RS19055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_024738716.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F58_RS19050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNHH010000061.1Sequence record reported by the local genomic context database.
Genomic interval151-1 611 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span151-2 221 ntGCF_015553815::NZ_JADNHH010000061.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553815::NZ_JADNHH010000061.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNHH010000061.1All displayed genes belong to this local TCS context.
Neighborhood span151-2 221 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 nt2 221 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2F58_RS19050GCF_015553815#I2F58_RS19050
HKClassicCurrent focus
151-1 611 nt · Forward (+)
I2F58_RS19055GCF_015553815#I2F58_RS19055
RRunclassified
1 592-2 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS19050The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1570716
Simplified PFAM architecture for HKOC_1570716
PFAM domain coverage: 164 / 486 aa (33.7%)
1 aa486 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[270-325] | HATPase_c[369-476]
- Domain count: 2
- Matched identifier: HKOC_1570716
- Positioned domains: HisKA 270-325 ; HATPase_c 369-476
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS19050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015553815
AssemblyASM1555381v1 · Scaffoldhaploid
Genome composition5 233 337 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key