1 Response_reg#1
14-117 aa · 104 aa · 41.4% of protein
Raw token
Response_reg:14:8.73e-18:117:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2F58_RS11540
Response regulator LytTR family
[Clostridium] symbiosum · GCF_015553815
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015553815#I2F58_RS11540Stable P2CS identifier used across views.
GenomeGCF_015553815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 251 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-243 aa · 94 aa · 37.5% of protein
Raw token
LytTR:150:0.0000000000287:243:101:98- Raw architecture: Response_reg:14:8.73e-18:117:106:111#LytTR:150:0.0000000000287:243:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015553815::NZ_JADNHH010000024.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68934-69689Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553815::NZ_JADNHH010000024.1::G00027Context members
I2F58_RS11540
Partner locus tags
I2F58_RS11540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003498134.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2F58_RS11540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNHH010000024.1Sequence record reported by the local genomic context database.
Genomic interval68 934-69 689 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 934-69 689 ntGCF_015553815::NZ_JADNHH010000024.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553815::NZ_JADNHH010000024.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNHH010000024.1All displayed genes belong to this local TCS context.
Neighborhood span68 934-69 689 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 934 nt69 689 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2F58_RS11540GCF_015553815#I2F58_RS11540
RRLytTRCurrent focus
68 934-69 689 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS11540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0715731
Simplified PFAM architecture for RROC_0715731
PFAM domain coverage: 197 / 251 aa (78.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-117] | LytTR[150-243]
- Domain count: 2
- Matched identifier: RROC_0715731
- Positioned domains: Response_reg 15-117 ; LytTR 150-243
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 512 · GCF_015553815
AssemblyASM1555381v1 · Scaffoldhaploid
Genome composition5 233 337 bp · 48,0% GC[Clostridium] symbiosum
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key