1 HisKA_3#1
215-278 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:215:0.0000000000000232:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D76_RS04480
Histidine kinase, Classic
Bifidobacterium longum · GCF_015553485
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553485#I2D76_RS04480Stable P2CS identifier used across views.
GenomeGCF_015553485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 450 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:325:0.000000305:443:120:109- Raw architecture: HisKA_3:215:0.0000000000000232:278:64:68#HATPase_c:325:0.000000305:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553485::NZ_JADNGT010000007.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76449-78454Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553485::NZ_JADNGT010000007.1::G00011Context members
I2D76_RS04480I2D76_RS04485
Partner locus tags
I2D76_RS04480I2D76_RS04485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195338376.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D76_RS04480Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGT010000007.1Sequence record reported by the local genomic context database.
Genomic interval76 449-77 801 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 449-78 454 ntGCF_015553485::NZ_JADNGT010000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553485::NZ_JADNGT010000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGT010000007.1All displayed genes belong to this local TCS context.
Neighborhood span76 449-78 454 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 449 nt78 454 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D76_RS04480GCF_015553485#I2D76_RS04480
HKClassicCurrent focus
76 449-77 801 nt · Forward (+)
I2D76_RS04485GCF_015553485#I2D76_RS04485
RRNarL
77 801-78 454 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551445#I2D05_RS04240Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1966703
Simplified PFAM architecture for HKOC_1966703
PFAM domain coverage: 66 / 450 aa (14.7%)
1 aa450 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1966703
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_015551445#I2D05_RS04240
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_015551445#I2D05_RS04240 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015553485
AssemblyASM1555348v1 · Scaffoldhaploid
Genome composition2 487 666 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 24 · HK 10 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key