1 HAMP#1
262-326 aa · 65 aa · 11.3% of protein
Raw token
HAMP:262:0.00000000000316:326:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS16700
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015553185
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553185#I2E06_RS16700Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 576 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
341-420 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:341:2.34e-25:420:80:803 HATPase_c#3
443-544 aa · 102 aa · 17.7% of protein
Raw token
HATPase_c:443:0.00000613:544:108:109- Raw architecture: HAMP:262:0.00000000000316:326:65:69#His_kinase:341:2.34e-25:420:80:80#HATPase_c:443:0.00000613:544:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553185::NZ_JADNGF010000016.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29437-32692Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000016.1::G00010Context members
I2E06_RS16700I2E06_RS09115
Partner locus tags
I2E06_RS16700I2E06_RS09115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173882431.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS16700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000016.1Sequence record reported by the local genomic context database.
Genomic interval29 437-31 167 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 437-32 692 ntGCF_015553185::NZ_JADNGF010000016.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000016.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000016.1All displayed genes belong to this local TCS context.
Neighborhood span29 437-32 692 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 437 nt32 692 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E06_RS16700GCF_015553185#I2E06_RS16700
HKClassicCurrent focus
29 437-31 167 nt · Forward (+)
I2E06_RS09115GCF_015553185#I2E06_RS09115
RRunclassified
31 133-32 692 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302885#G4951_RS16290Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184926
Simplified PFAM architecture for HKOC_1184926
PFAM domain coverage: 129 / 576 aa (22.4%)
1 aa576 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[277-325] | His_kinase[341-420]
- Domain count: 2
- Matched identifier: HKOC_1184926
- Positioned domains: HAMP 277-325 ; His_kinase 341-420
Cluster members and taxonomy
Representative gene: GCF_013302885#G4951_RS16290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key