1 HisKA_3#1
36-101 aa · 66 aa · 28.9% of protein
Raw token
HisKA_3:36:0.00000000000052:101:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS16360
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015553185
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553185#I2E06_RS16360Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-226 aa · 87 aa · 38.2% of protein
Raw token
HATPase_c:140:0.000000000311:226:101:109- Raw architecture: HisKA_3:36:0.00000000000052:101:68:68#HATPase_c:140:0.000000000311:226:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553185::NZ_JADNGF010000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159262-160573Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000003.1::G00033Context members
I2E06_RS16360I2E06_RS02945
Partner locus tags
I2E06_RS16360I2E06_RS02945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101884973.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS16360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000003.1Sequence record reported by the local genomic context database.
Genomic interval159 262-159 948 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 262-160 573 ntGCF_015553185::NZ_JADNGF010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000003.1All displayed genes belong to this local TCS context.
Neighborhood span159 262-160 573 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 262 nt160 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E06_RS16360GCF_015553185#I2E06_RS16360
HKClassicCurrent focus
159 262-159 948 nt · Forward (+)
I2E06_RS02945GCF_015553185#I2E06_RS02945
RRNarL
159 953-160 573 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865405#CDL27_RS17640Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926539
Simplified PFAM architecture for HKOC_2926539
PFAM domain coverage: 152 / 228 aa (66.7%)
1 aa228 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[36-100] | HATPase_c[139-225]
- Domain count: 2
- Matched identifier: HKOC_2926539
- Positioned domains: HisKA_3 36-100 ; HATPase_c 139-225
Cluster members and taxonomy
Representative gene: GCF_002865405#CDL27_RS17640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key