1 Response_reg#1
4-117 aa · 114 aa · 84.4% of protein
Raw token
Response_reg:4:2.15e-28:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS09015
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_015553185
ClassRRTypeCheYLength135 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015553185#I2E06_RS09015Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length135 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 135 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa135 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.15e-28:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015553185::NZ_JADNGF010000016.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span65-472Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000016.1::G00008Context members
I2E06_RS09015
Partner locus tags
I2E06_RS09015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195396723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS09015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000016.1Sequence record reported by the local genomic context database.
Genomic interval65-472 nt408 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65-472 ntGCF_015553185::NZ_JADNGF010000016.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000016.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000016.1All displayed genes belong to this local TCS context.
Neighborhood span65-472 nt408 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 nt472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2E06_RS09015GCF_015553185#I2E06_RS09015
RRCheYCurrent focus
65-472 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553185#I2E06_RS09015The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2291779
Simplified PFAM architecture for RROC_2291779
PFAM domain coverage: 113 / 135 aa (83.7%)
1 aa135 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-116]
- Domain count: 1
- Matched identifier: RROC_2291779
- Positioned domains: Response_reg 4-116
Cluster members and taxonomy
Representative gene: GCF_015553185#I2E06_RS09015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key