1 Response_reg#1
5-117 aa · 113 aa · 45.2% of protein
Raw token
Response_reg:5:4.17e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS06815
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_015553185
ClassRRTypeunclassifiedLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553185#I2E06_RS06815Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 250 aa (76.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
154-195 aa · 42 aa · 16.8% of protein
Raw token
HTH_AraC:154:0.000000012:195:42:423 HTH_AraC#3
211-246 aa · 36 aa · 14.4% of protein
Raw token
HTH_AraC:211:0.0000000126:246:36:42- Raw architecture: Response_reg:5:4.17e-30:117:113:111#HTH_AraC:154:0.000000012:195:42:42#HTH_AraC:211:0.0000000126:246:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553185::NZ_JADNGF010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46778-49334Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000010.1::G00002Context members
I2E06_RS06810I2E06_RS06815
Partner locus tags
I2E06_RS06810I2E06_RS06815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195396568.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS06815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000010.1Sequence record reported by the local genomic context database.
Genomic interval48 582-49 334 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 778-49 334 ntGCF_015553185::NZ_JADNGF010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000010.1All displayed genes belong to this local TCS context.
Neighborhood span46 778-49 334 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 778 nt49 334 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E06_RS06810GCF_015553185#I2E06_RS06810
HKClassic
46 778-48 580 nt · Forward (+)
I2E06_RS06815GCF_015553185#I2E06_RS06815
RRunclassifiedCurrent focus
48 582-49 334 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553185#I2E06_RS06815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0725889
Simplified PFAM architecture for RROC_0725889
PFAM domain coverage: 192 / 250 aa (76.8%)
1 aa250 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[167-246]
- Domain count: 2
- Matched identifier: RROC_0725889
- Positioned domains: Response_reg 5-116 ; HTH_18 167-246
Cluster members and taxonomy
Representative gene: GCF_015553185#I2E06_RS06815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key