1 HAMP#1
301-373 aa · 73 aa · 12.2% of protein
Raw token
HAMP:301:0.0000000199:373:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2E06_RS06810
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015553185
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015553185#I2E06_RS06810Stable P2CS identifier used across views.
GenomeGCF_015553185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 600 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
384-462 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:384:4.71e-24:462:79:803 HATPase_c#3
479-563 aa · 85 aa · 14.2% of protein
Raw token
HATPase_c:479:0.0000017:563:85:109- Raw architecture: HAMP:301:0.0000000199:373:73:69#His_kinase:384:4.71e-24:462:79:80#HATPase_c:479:0.0000017:563:85:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015553185::NZ_JADNGF010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46778-49334Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015553185::NZ_JADNGF010000010.1::G00002Context members
I2E06_RS06810I2E06_RS06815
Partner locus tags
I2E06_RS06810I2E06_RS06815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195396566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2E06_RS06810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNGF010000010.1Sequence record reported by the local genomic context database.
Genomic interval46 778-48 580 nt1 803 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 778-49 334 ntGCF_015553185::NZ_JADNGF010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015553185::NZ_JADNGF010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNGF010000010.1All displayed genes belong to this local TCS context.
Neighborhood span46 778-49 334 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 778 nt49 334 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2E06_RS06810GCF_015553185#I2E06_RS06810
HKClassicCurrent focus
46 778-48 580 nt · Forward (+)
I2E06_RS06815GCF_015553185#I2E06_RS06815
RRunclassified
48 582-49 334 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553185#I2E06_RS06810The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1054698
Simplified PFAM architecture for HKOC_1054698
PFAM domain coverage: 156 / 600 aa (26.0%)
1 aa600 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[391-465] | HATPase_c[484-564]
- Domain count: 2
- Matched identifier: HKOC_1054698
- Positioned domains: His_kinase 391-465 ; HATPase_c 484-564
Cluster members and taxonomy
Representative gene: GCF_015553185#I2E06_RS06810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015553185
AssemblyASM1555318v1 · Scaffoldhaploid
Genome composition3 373 099 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key