1 Response_reg#1
5-111 aa · 107 aa · 48.4% of protein
Raw token
Response_reg:5:3e-25:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS10725
Response regulator OmpR family
Dorea longicatena · GCF_015552885
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS10725Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 221 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-218 aa · 77 aa · 34.8% of protein
Raw token
Trans_reg_C:142:2.12e-29:218:77:77- Raw architecture: Response_reg:5:3e-25:111:109:111#Trans_reg_C:142:2.12e-29:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000082.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6432-8075Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000082.1::G00037Context members
I2D84_RS10720I2D84_RS10725
Partner locus tags
I2D84_RS10720I2D84_RS10725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427903.1Primary protein accession used for annex mappings.
UniProt accessionA6BKE3Primary UniProt accession resolved in the annex database.
UniProt IDA6BKE3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS10725Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000082.1Sequence record reported by the local genomic context database.
Genomic interval7 410-8 075 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 432-8 075 ntGCF_015552885::NZ_JADNFQ010000082.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000082.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000082.1All displayed genes belong to this local TCS context.
Neighborhood span6 432-8 075 nt1 644 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 432 nt8 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS10720GCF_015552885#I2D84_RS10720
HKClassic
6 432-7 373 nt · Reverse (-)
I2D84_RS10725GCF_015552885#I2D84_RS10725
RROmpRCurrent focus
7 410-8 075 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS08690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677874
Simplified PFAM architecture for RROC_1677874
PFAM domain coverage: 185 / 221 aa (83.7%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[142-218]
- Domain count: 2
- Matched identifier: RROC_1677874
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 142-218 ; Trans_reg_C 142-218
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS08690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key