1 Response_reg#1
4-117 aa · 114 aa · 47.9% of protein
Raw token
Response_reg:4:0.000000000000547:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS10150
Response regulator LytTR family
Dorea longicatena · GCF_015552885
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015552885#I2D84_RS10150Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 238 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-231 aa · 87 aa · 36.6% of protein
Raw token
LytTR:145:0.000000000825:231:92:98- Raw architecture: Response_reg:4:0.000000000000547:117:118:111#LytTR:145:0.000000000825:231:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015552885::NZ_JADNFQ010000073.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3724-4440Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000073.1::G00035Context members
I2D84_RS10150
Partner locus tags
I2D84_RS10150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006426522.1Primary protein accession used for annex mappings.
UniProt accessionA6BDY4Primary UniProt accession resolved in the annex database.
UniProt IDA6BDY4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS10150Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000073.1Sequence record reported by the local genomic context database.
Genomic interval3 724-4 440 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 724-4 440 ntGCF_015552885::NZ_JADNFQ010000073.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000073.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000073.1All displayed genes belong to this local TCS context.
Neighborhood span3 724-4 440 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 724 nt4 440 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D84_RS10150GCF_015552885#I2D84_RS10150
RRLytTRCurrent focus
3 724-4 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS02245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932509
Simplified PFAM architecture for RROC_0932509
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[144-230]
- Domain count: 2
- Matched identifier: RROC_0932509
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 144-230 ; LytTR 144-230
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS02245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key