1 dCache_1#1
102-292 aa · 191 aa · 30.8% of protein
Raw token
dCache_1:102:0.0000000000000013:292:197:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS09295
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS09295Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage379 / 621 aa (61.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-471 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:392:4.94e-34:471:80:803 HATPase_c#3
487-594 aa · 108 aa · 17.4% of protein
Raw token
HATPase_c:487:1.45e-16:594:111:109- Raw architecture: dCache_1:102:0.0000000000000013:292:197:195#His_kinase:392:4.94e-34:471:80:80#HATPase_c:487:1.45e-16:594:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000062.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9457-12934Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000062.1::G00030Context members
I2D84_RS09295I2D84_RS09300
Partner locus tags
I2D84_RS09295I2D84_RS09300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022416311.1Primary protein accession used for annex mappings.
UniProt accessionA0A174GQP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174GQP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS09295Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000062.1Sequence record reported by the local genomic context database.
Genomic interval9 457-11 322 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 457-12 934 ntGCF_015552885::NZ_JADNFQ010000062.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000062.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000062.1All displayed genes belong to this local TCS context.
Neighborhood span9 457-12 934 nt3 478 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 457 nt12 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS09295GCF_015552885#I2D84_RS09295
HKClassicCurrent focus
9 457-11 322 nt · Reverse (-)
I2D84_RS09300GCF_015552885#I2D84_RS09300
RRunclassified
11 336-12 934 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS12810Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970275
Simplified PFAM architecture for HKOC_0970275
PFAM domain coverage: 415 / 621 aa (66.8%)
1 aa621 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[65-291] | His_kinase[392-471] | HATPase_c[488-595]
- Domain count: 3
- Matched identifier: HKOC_0970275
- Positioned domains: dCache_1 65-291 ; His_kinase 392-471 ; HATPase_c 488-595
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS12810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key