1 dCache_1#1
38-250 aa · 213 aa · 37.7% of protein
Raw token
dCache_1:38:0.000000617:250:217:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS07140
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS07140Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage466 / 565 aa (82.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation4 items
2 HAMP#2
272-342 aa · 71 aa · 12.6% of protein
Raw token
HAMP:272:0.000000000326:342:71:693 His_kinase#3
357-436 aa · 80 aa · 14.2% of protein
Raw token
His_kinase:357:2e-25:436:80:804 HATPase_c#4
455-556 aa · 102 aa · 18.1% of protein
Raw token
HATPase_c:455:0.000000000161:556:109:109- Raw architecture: dCache_1:38:0.000000617:250:217:195#HAMP:272:0.000000000326:342:71:69#His_kinase:357:2e-25:436:80:80#HATPase_c:455:0.000000000161:556:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000039.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6953-10157Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000039.1::G00021Context members
I2D84_RS07135I2D84_RS07140
Partner locus tags
I2D84_RS07135I2D84_RS07140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195389532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS07140Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000039.1Sequence record reported by the local genomic context database.
Genomic interval8 460-10 157 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 953-10 157 ntGCF_015552885::NZ_JADNFQ010000039.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000039.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000039.1All displayed genes belong to this local TCS context.
Neighborhood span6 953-10 157 nt3 205 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 953 nt10 157 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS07135GCF_015552885#I2D84_RS07135
RRunclassified
6 953-8 479 nt · Reverse (-)
I2D84_RS07140GCF_015552885#I2D84_RS07140
HKClassicCurrent focus
8 460-10 157 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552885#I2D84_RS07140The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1236610
Simplified PFAM architecture for HKOC_1236610
PFAM domain coverage: 374 / 565 aa (66.2%)
1 aa565 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[39-232] | His_kinase[357-435] | HATPase_c[455-555]
- Domain count: 3
- Matched identifier: HKOC_1236610
- Positioned domains: dCache_1 39-232 ; His_kinase 357-435 ; HATPase_c 455-555
Cluster members and taxonomy
Representative gene: GCF_015552885#I2D84_RS07140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key