1 dCache_1#1
159-269 aa · 111 aa · 19.2% of protein
Raw token
dCache_1:159:0.00000027:269:115:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS04090
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS04090Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage363 / 579 aa (62.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-355 aa · 70 aa · 12.1% of protein
Raw token
HAMP:286:0.000000000721:355:70:693 His_kinase#3
370-449 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:370:3.52e-34:449:80:804 HATPase_c#4
469-570 aa · 102 aa · 17.6% of protein
Raw token
HATPase_c:469:4.4e-18:570:105:109- Raw architecture: dCache_1:159:0.00000027:269:115:195#HAMP:286:0.000000000721:355:70:69#His_kinase:370:3.52e-34:449:80:80#HATPase_c:469:4.4e-18:570:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000016.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1938-5265Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000016.1::G00010Context members
I2D84_RS04085I2D84_RS04090
Partner locus tags
I2D84_RS04085I2D84_RS04090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006427958.1Primary protein accession used for annex mappings.
UniProt accessionA6BKJ8Primary UniProt accession resolved in the annex database.
UniProt IDA6BKJ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS04090Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000016.1Sequence record reported by the local genomic context database.
Genomic interval3 526-5 265 nt1 740 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 938-5 265 ntGCF_015552885::NZ_JADNFQ010000016.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000016.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000016.1All displayed genes belong to this local TCS context.
Neighborhood span1 938-5 265 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 938 nt5 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS04085GCF_015552885#I2D84_RS04085
RRunclassified
1 938-3 536 nt · Forward (+)
I2D84_RS04090GCF_015552885#I2D84_RS04090
HKClassicCurrent focus
3 526-5 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS08965Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1167120
Simplified PFAM architecture for HKOC_1167120
PFAM domain coverage: 459 / 579 aa (79.3%)
1 aa579 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[43-267] | HAMP[304-355] | His_kinase[371-449] | HATPase_c[469-571]
- Domain count: 4
- Matched identifier: HKOC_1167120
- Positioned domains: dCache_1 43-267 ; HAMP 304-355 ; His_kinase 371-449 ; HATPase_c 469-571
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS08965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key